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Publications

Peer-reviewed publications

2015 (2)

  • Chen X, Hasan M, Libri V, Urrutia A, Beitz B, Rouilly V, Duffy D, Patin E, Chalmond B, Rogge L, Quintana-Murci L, *Albert ML, *Schwikowski B, for the Milieu Interieur C (2015) Automated flow cytometric analysis across large numbers of samples and cell types. Clinical immunology doi: 10.1016/j.clim.2014.12.009

  • Grange L, Bureau F, Nikolayeva I, Paul R, Van Steen K, *Schwikowski B, *Sakuntabhai A (2015) Filter-free exhaustive odds ratio-based genome-wide interaction approach pinpoints evidence for interaction in the HLA region.]] Accepted for publication in BMC Genetics

  • Lippmann J, Gwinner F, Rey C, Tamir U, Law H, *Schwikowski B, *Enninga J (2015) Decrypting the Roles of Bacterial Localization, Internalization and Effector Injection in Shaping the Host Immune Response in Epithelial Cells.]] Submitted

2014 (2)

2013 (3)

2012 (4)

  • Vandenbogaert M, Hourdel V, Jardin-Mathé O, Bigeard J, Bonhomme L, Legros V, Hirt H, Schwikowski B, Pflieger D (2012) Automated phosphopeptide identification using multiple MS/MS fragmentation modes. Journal of Proteome Research Publication Date (Web): October 24, 2012

  • Nicolas P, Mader U, Dervyn E, Rochat T, Leduc A, Pigeonneau N, Bidnenko E, Marchadier E, Hoebeke M, Aymerich S, Becher D, Bisicchia P, Botella E, Delumeau O, Doherty G, Denham EL, Fogg MJ, Fromion V, Goelzer A, Hansen A, Hartig E, Harwood CR, Homuth G, Jarmer H, Jules M, Klipp E, Le Chat L, Lecointe F, Lewis P, Liebermeister W, March A, Mars RA, Nannapaneni P, Noone D, Pohl S, Rinn B, Rugheimer F, Sappa PK, Samson F, Schaffer M, Schwikowski B, Steil L, Stulke J, Wiegert T, Devine KM, Wilkinson AJ, van Dijl JM, Hecker M, Volker U, Bessieres P, Noirot P (2012) Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis. Science 335(6072): 1103-1106

  • Buescher JM, Liebermeister W, Jules M, Uhr M, Muntel J, Botella E, Hessling B, Kleijn RJ, Le Chat L, Lecointe F, Mader U, Nicolas P, Piersma S, Rugheimer F, Becher D, Bessieres P, Bidnenko E, Denham EL, Dervyn E, Devine KM, Doherty G, Drulhe S, Felicori L, Fogg MJ, Goelzer A, Hansen A, Harwood CR, Hecker M, Hubner S, Hultschig C, Jarmer H, Klipp E, Leduc A, Lewis P, Molina F, Noirot P, Peres S, Pigeonneau N, Pohl S, Rasmussen S, Rinn B, Schaffer M, Schnidder J, Schwikowski B, Van Dijl JM, Veiga P, Walsh S, Wilkinson AJ, Stelling J, Aymerich S, Sauer U (2012) Global network reorganization during dynamic adaptations of Bacillus subtilis metabolism. Science 335(6072): 1099-1103

  • Li-Thiao-Te S, Schwikowski B (2012) Feature Detection with Controlled Error Rates in LC/MS Images. Journal of computational biology : a journal of computational molecular cell biology

2011 (3)

2010 (5)

2009 (2)

2008 (6)

2007 (12)

2006 (8)

2005 (4)

2004 (2)

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